CSBDeep – a toolbox for CARE

PyPI version Linux build status Windows build status

This is the documentation for the CSBDeep Python package, which provides a toolbox for content-aware restoration (CARE) of (fluorescence) microscopy images, based on deep learning via Keras and TensorFlow. Please see the CSBDeep website for more information with links to our manuscript and supplementary material.

After installation of the Python package, we recommend to follow the provided examples that provide step-by-step instructions via Jupyter notebooks on how to use this package.


This is an early version of the software. Several features are still missing, including the use of network ensembles and creating training data via simulation.